Rheoinformatic

Publications

We publish most of our work in peer-reviewed journals. Where possible, we have also included links to data and code used in each paper. Please reach out if you have any questions or thoughts on our work.

Published (peer-reviewed or preprint)

2024

Network physics of attractive colloidal gels: Resilience, rigidity, and phase diagram
Mohammad Nabizadeh, Farzaneh Nasirian, Xinzhi Li, Yug Saraswat, Rony Waheibi, Lilian C. Hsiao, Dapeng Bi, Babak Ravandi, Safa Jamali
Proceedings of the National Academy of Sciences  ·  09 Jan 2024
Network ScienceMohammad Nabizadeh
Predicting yielding in attractive colloidal gels
Deepak Mangal, Mohammad Nabizadeh, Safa Jamali
Physical Review E  ·  05 Jan 2024
Colloidal SystemsDeepak Mangal
Unbiased construction of constitutive relations for soft materials from experiments via rheology-informed neural networks
Mohammadamin Mahmoudabadbozchelou, Krutarth M. Kamani, Simon A. Rogers, Safa Jamali
Proceedings of the National Academy of Sciences  ·  03 Jan 2024
Machine LearningAmin Mahmoudabad

2023

Characterizing blood hysteresis via tensorial thixo-elasto-viscoplastic modeling
Andre Pincot, F. John Burpo, Elahe Javadi, Safa Jamali, Sean Farrington, Matthew J. Armstrong
Physics of Fluids  ·  01 Nov 2023
HemorheologyElahe Javadi
Data-driven methods in Rheology
Kyung Hyun Ahn, Safa Jamali
Rheologica Acta  ·  01 Oct 2023
Machine LearningSafa Jamali
Fractional rheology-informed neural networks for data-driven identification of viscoelastic constitutive models
Donya Dabiri, Milad Saadat, Deepak Mangal, Safa Jamali
Rheologica Acta  ·  26 Aug 2023
Machine LearningCodeDonya Dabiri
A fully physiologically-informed time- and rate-dependent hemorheological constitutive model
Elahe Javadi, Matthew J. Armstrong, Safa Jamali
Journal of Rheology  ·  21 Apr 2023
HemorheologyElahe Javadi
Topological origins of yielding in short-ranged weakly attractive colloidal gels
Deepak Mangal, Mohammad Nabizadeh, Safa Jamali
The Journal of Chemical Physics  ·  03 Jan 2023
Colloidal SystemsNetwork ScienceDeepak Mangal
A rheologist's guideline to data-driven recovery of complex fluids' parameters from constitutive models
Milad Saadat, Deepak Mangal, Safa Jamali
Digital Discovery  ·  01 Jan 2023
Machine LearningCodeMilad Saadat

2022

Drag reduction and the Vogel exponent of a flexible beam in transient shear flows
Ali Mehdizadeh Rahimi, Steven R. Lustig, Jaydeep P. Bardhan, Safa Jamali
Physics of Fluids  ·  01 Oct 2022
Colloidal SystemsAli Mehdizadeh
Circulating cell clusters aggravate the hemorheological abnormalities in COVID-19
Elahe Javadi, He Li, Ander Dorken Gallastegi, Galit H. Frydman, Safa Jamali, George Em Karniadakis
Biophysical Journal  ·  01 Sep 2022
HemorheologyCodeElahe Javadi
The Mnemosyne number and the rheology of remembrance
Safa Jamali, Gareth H. McKinley
Journal of Rheology  ·  29 Aug 2022
Network ScienceSafa Jamali
Solvation Thermodynamics of Solutes in Water and Ionic Liquids Using the Multiscale Solvation-Layer Interface Condition Continuum Model
Ali Mehdizadeh Rahimi, Safa Jamali, Jaydeep P. Bardhan, Steven R. Lustig
Journal of Chemical Theory and Computation  ·  24 Aug 2022
Machine LearningAli Mehdizadeh
Data-driven selection of constitutive models via rheology-informed neural networks (RhINNs)
Milad Saadat, Mohammadamin Mahmoudabadbozchelou, Safa Jamali
Rheologica Acta  ·  03 Aug 2022
Machine LearningCodeMilad Saadat
Structure and Dynamics of Force Clusters and Networks in Shear Thickening Suspensions
Mohammad Nabizadeh, Abhinendra Singh, Safa Jamali
Physical Review Letters  ·  02 Aug 2022
Colloidal SystemsMohammad Nabizadeh
Predicting hemodynamic performance of Fontan Operation for Glenn physiology using computational fluid dynamics: Ten patient-specific cases
Elahe Javadi,
Journal of Clinical Images and Medical Case Reports  ·  29 Jun 2022
HemorheologyElahe Javadi
Digital rheometer twins: Learning the hidden rheology of complex fluids through rheology-informed graph neural networks
Mohammadamin Mahmoudabadbozchelou, Krutarth M. Kamani, Simon A. Rogers, Safa Jamali
Proceedings of the National Academy of Sciences  ·  11 May 2022
Machine LearningAmin Mahmoudabad
Increasing efficiency and accuracy of magnetic interaction calculations in colloidal simulation through machine learning
Chunzhou Pan, Mohammadamin Mahmoudabadbozchelou, Xiaoli Duan, James C. Benneyan, Safa Jamali, Randall M. Erb
Journal of Colloid and Interface Science  ·  01 Apr 2022
Machine LearningAmin Mahmoudabad
Thixotropy and rheological hysteresis in blood flow
Elahe Javadi, Safa Jamali
The Journal of Chemical Physics  ·  22 Feb 2022
HemorheologyElahe Javadi
nn-PINNs: Non-Newtonian physics-informed neural networks for complex fluid modeling
Mohammadamin Mahmoudabadbozchelou, George Em. Karniadakis, Safa Jamali
Soft Matter  ·  01 Jan 2022
Machine LearningAmin Mahmoudabad

2021

Jamming Distance Dictates Colloidal Shear Thickening
Shravan Pradeep, Mohammad Nabizadeh, Alan R. Jacob, Safa Jamali, Lilian C. Hsiao
Physical Review Letters  ·  06 Oct 2021
Colloidal SystemsMohammad Nabizadeh
Predicting Solvation Thermodynamics in Water and Ionic Liquids using the Multi-Scale Solvation Layer Interface Condition (SLIC)
Ali Mehdizadeh Rahimi, Safa Jamali, Jaydeep Bardhan, Steve Lustig
ChemRxiv  ·  17 Sep 2021
Machine LearningAli Mehdizadeh
Life and death of colloidal bonds control the rate-dependent rheology of gels
Mohammad Nabizadeh, Safa Jamali
Nature Communications  ·  13 Jul 2021
Network ScienceMohammad Nabizadeh
In silico biophysics and hemorheology of blood hyperviscosity syndrome
Elahe Javadi, Yixiang Deng, George Em Karniadakis, Safa Jamali
Biophysical Journal  ·  01 Jul 2021
HemorheologyElahe Javadi
Rheology-Informed Neural Networks (RhINNs) for forward and inverse metamodelling of complex fluids
Mohammadamin Mahmoudabadbozchelou, Safa Jamali
Scientific Reports  ·  08 Jun 2021
Machine LearningAmin Mahmoudabad
Integrating blood cell mechanics, platelet adhesive dynamics and coagulation cascade for modelling thrombus formation in normal and diabetic blood
Alireza Yazdani, Yixiang Deng, He Li, Elahe Javadi, Zhen Li, Safa Jamali, Chensen Lin, Jay D. Humphrey, Christos S. Mantzoros, George Em Karniadakis
Journal of The Royal Society Interface  ·  01 Feb 2021
HemorheologyElahe Javadi
Hemorheology: the critical role of flow type in blood viscosity measurements
Elahe Javadi, Safa Jamali
Soft Matter  ·  01 Jan 2021
HemorheologyElahe Javadi

2020

Entropy analysis and thermal optimization of nanofluid impinging jet using artificial neural network and genetic algorithm
Mohammadamin Mahmoudabadbozchelou, Amirsaman Eghtesad, Safa Jamali, Hossein Afshin
International Communications in Heat and Mass Transfer  ·  01 Dec 2020
Machine LearningAmin Mahmoudabad
Rheology discussions: The physics of dense suspensions
Safa Jamali, Emanuela Del Gado, Jeffrey F. Morris
Journal of Rheology  ·  01 Nov 2020
Colloidal SystemsSafa Jamali
A hydrodynamic model for discontinuous shear-thickening in dense suspensions
Mu Wang, Safa Jamali, John F. Brady
Journal of Rheology  ·  01 Mar 2020
Colloidal SystemsSafa Jamali
Time-rate-transformation framework for targeted assembly of short-range attractive colloidal suspensions
Safa Jamali, Robert C. Armstrong, Gareth H. McKinley
Materials Today Advances  ·  01 Mar 2020
Machine LearningSafa Jamali

2019

Multiscale Nature of Thixotropy and Rheological Hysteresis in Attractive Colloidal Suspensions under Shear
Safa Jamali, Robert C. Armstrong, Gareth H. McKinley
Physical Review Letters  ·  10 Dec 2019
Colloidal SystemsSafa Jamali
Alternative Frictional Model for Discontinuous Shear Thickening of Dense Suspensions: Hydrodynamics
Safa Jamali, John F. Brady
Physical Review Letters  ·  25 Sep 2019
Colloidal SystemsSafa Jamali

2017

Rheological State Diagrams for Rough Colloids in Shear Flow
Lilian C. Hsiao, Safa Jamali, Emmanouil Glynos, Peter F. Green, Ronald G. Larson, Michael J. Solomon
Physical Review Letters  ·  11 Oct 2017
Colloidal SystemsSafa Jamali
Microstructural Rearrangements and their Rheological Implications in a Model Thixotropic Elastoviscoplastic Fluid
Safa Jamali, Gareth H. McKinley, Robert C. Armstrong
Physical Review Letters  ·  27 Jan 2017
Colloidal SystemsSafa Jamali
Structural fingerprints of yielding mechanisms in attractive colloidal gels
Arman Boromand, Safa Jamali, João M. Maia
Soft Matter  ·  01 Jan 2017
Network ScienceSafa Jamali

2016

Conformational Transitions of Polymer Brushes for Reversibly Switching Graphene Transistors
Song Liu, Safa Jamali, Qingfeng Liu, Joao Maia, Jong-Beom Baek, Naisheng Jiang, Ming Xu, Liming Dai
Macromolecules  ·  30 Sep 2016
Colloidal SystemsSafa Jamali

2015

Gaussian-inspired auxiliary non-equilibrium thermostat (GIANT) for Dissipative Particle Dynamics simulations
Safa Jamali, Arman Boromand, Shaghayegh Khani, Joao Maia
Computer Physics Communications  ·  01 Dec 2015
Machine LearningSafa Jamali
Microstructure and rheology of soft to rigid shear-thickening colloidal suspensions
Safa Jamali, Arman Boromand, Norman Wagner, Joao Maia
Journal of Rheology  ·  01 Nov 2015
Colloidal SystemsSafa Jamali
Viscosity measurement techniques in Dissipative Particle Dynamics
Arman Boromand, Safa Jamali, Joao M. Maia
Computer Physics Communications  ·  01 Nov 2015
Colloidal SystemsSafa Jamali
Generalized mapping of multi-body dissipative particle dynamics onto fluid compressibility and the Flory-Huggins theory
Safa Jamali, Arman Boromand, Shaghayegh Khani, Jacob Wagner, Mikio Yamanoi, Joao Maia
The Journal of Chemical Physics  ·  28 Apr 2015
Colloidal SystemsSafa Jamali
Polymer-mediated nanorod self-assembly predicted by dissipative particle dynamics simulations
Shaghayegh Khani, Safa Jamali, Arman Boromand, Michael J. A. Hore, Joao Maia
Soft Matter  ·  01 Jan 2015
Colloidal SystemsSafa Jamali

2013

Dispersion and re-agglomeration phenomena during melt mixing of polypropylene with multi-wall carbon nanotubes
Safa Jamali, Maria C. Paiva, José A. Covas
Polymer Testing  ·  01 Jun 2013
Colloidal SystemsSafa Jamali
Bridging the gap between microstructure and macroscopic behavior of monodisperse and bimodal colloidal suspensions
Safa Jamali, Mikio Yamanoi, João Maia
Soft Matter  ·  01 Jan 2013
Colloidal SystemsSafa Jamali

Unpublished work(s)